Package: speaq 2.7.0
speaq: Tools for Nuclear Magnetic Resonance (NMR) Spectra Alignment, Peak Based Processing, Quantitative Analysis and Visualizations
Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More details can be found in Vu et al. (2011) <doi:10.1186/1471-2105-12-405> and Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018>.
Authors:
speaq_2.7.0.tar.gz
speaq_2.7.0.zip(r-4.5)speaq_2.7.0.zip(r-4.4)speaq_2.7.0.zip(r-4.3)
speaq_2.7.0.tgz(r-4.5-any)speaq_2.7.0.tgz(r-4.4-any)speaq_2.7.0.tgz(r-4.3-any)
speaq_2.7.0.tar.gz(r-4.5-noble)speaq_2.7.0.tar.gz(r-4.4-noble)
speaq_2.7.0.tgz(r-4.4-emscripten)speaq_2.7.0.tgz(r-4.3-emscripten)
speaq.pdf |speaq.html✨
speaq/json (API)
NEWS
| # Install 'speaq' in R: |
| install.packages('speaq', repos = c('https://beirnaert.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/beirnaert/speaq/issues
- Winedata - Wine dataset
Last updated 3 years agofrom:3fa92499b7. Checks:3 OK, 5 NOTE. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Feb 22 2025 |
| R-4.5-win | NOTE | Feb 22 2025 |
| R-4.5-mac | NOTE | Feb 22 2025 |
| R-4.5-linux | NOTE | Feb 22 2025 |
| R-4.4-win | NOTE | Feb 22 2025 |
| R-4.4-mac | NOTE | Feb 22 2025 |
| R-4.3-win | OK | Feb 22 2025 |
| R-4.3-mac | OK | Feb 22 2025 |
Exports:AddPlottingStuffBuildFeatureMatrixBuildRawDataMatrixBWRcreateNullSamplingdetectSpecPeaksdohClusterdohClusterCustommedSegmentsdoShiftdrawBWdrawSpecdrawSpecPPMfindReffindSegPeakListfindShiftStepFFTgetWaveletPeaksGetWinedata.subsethclust.groupinghClustAlignHMDBsearchRmakeSimulatedDataPeakFillingPeakGrouperregroupRrelevant.features.preturnLocalMaximaROIplotSCANTSilhouetR
Dependencies:askpasscliclustercodetoolscolorspacecurldata.tabledigestdoRNGdoSNOWfansifarverforeachggplot2gluegridExtragtablehttrimputeisobanditeratorsitertoolsjsonlitelabelinglatticelifecyclemagrittrMASSMassSpecWaveletMatrixmgcvmimemissForestmunsellnlmeopensslpillarpkgconfigplyrR6randomForestRColorBrewerRcppRcppArmadilloRcppGSLRcppParallelRcppZigguratreshape2Rfastrlangrngtoolsrvestscalesselectrsnowstringistringrsystibbleutf8vctrsviridisLitewithrxml2
User guide for speaq package version <= 1.2.3
Rendered fromclassic_speaq_vignette.Rmdusingknitr::rmarkdownon Feb 22 2025.Last update: 2018-11-20
Started: 2017-05-11
speaq 2.0 function illustrations
Rendered fromspeaq2_illustrations.Rmdusingknitr::rmarkdownon Feb 22 2025.Last update: 2019-02-22
Started: 2017-05-09
